NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_11158955

Scaffold Ga0211733_11158955


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_11158955 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4912
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F010535Metagenome / Metatranscriptome302Y
F044439Metagenome / Metatranscriptome154Y
F057151Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_111589554F057151GAGGMSNIPQYFAQIDDNNICLQVAVVTRLFLEENPERYPGTWVETFTDLPNKTYAAPGYIYDPVAKDFSPPPPTVE
Ga0211733_111589557F001872N/AVAIAKAKAGIPNARDYIGNADGASPKPRAGMDEWIRQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKHPKAGRLNALSFIDVVIANANDLGLQCILDYFPEPHGRAWRCDRYAWQKYDKPTIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKA
Ga0211733_111589558F010535AGGMSEPQFFDYSVYVGAMDNGQEILVQIFTEPETGKYLLGQIAFRSHASSWGVPIPLEKR
Ga0211733_111589559F044439N/AMGRAHTTGEKMNYFAEKLIGLVLCTVFGITALAGAPSASKELSGTIALAPISVQPYLIGPTTTTSSTIFIDPYSTACEQFSALAINLGWDPDQRTVLESIMQRESNCTPNAINRKDPNGGSRG
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