NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10685849

Scaffold Ga0211733_10685849


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10685849 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4477
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024558Metagenome / Metatranscriptome205Y
F039639Metagenome / Metatranscriptome163Y
F061859Metagenome / Metatranscriptome131Y
F065781Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_1068584914F065781GGAMTEGDRAGWWAVVLLVMLGATAYFTIFMIVFSFLRS
Ga0211733_106858493F024558AGGAMIVILYTEDFEPIIPIDLPLWLLERLEIEGAVRVAVNKPKGFKGEKVPVGTVGNENMPTVRIHYEKLRWRDGTLKTILVTPDEELALSLNPDWLPGQRAPIQMYVGVMRKMHDELIKQIRKNQD
Ga0211733_106858495F039639AGGTGGMNIDREFVKWFYEDAYPEQGSNRRQVYSTTQNSQNINIIDYWMREAFRAGAQAAANNYEVNALEQFEAFNINRNYPL
Ga0211733_106858498F061859AGGAGMTVEALLVIIGLCLFCIYFVLEYQRAATPPYQEPIKPEPDMAEQWVAATANAKPETLDNIDRWNAKIGDKIWYKESAAELEPTPLNPQAAWPFPSGPKP
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