NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10515337

Scaffold Ga0211733_10515337


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10515337 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2498
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014495Metagenome / Metatranscriptome262Y
F025280Metagenome / Metatranscriptome202Y
F025684Metagenome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_105153374F025280AGGAMTADNWLFILVMGVVILTAYLTATAPKITAKDREEMEEEWWG
Ga0211733_105153375F025684GAGMEDDEEFENYTQRSEATLAYRLMEYLEFLGVITDEHVNYLRWPPIELIEDAEAALKDER
Ga0211733_105153377F014495AGGAMIKPAQAAPLGKKHRVSSDSAWPLRGVDGKTFAERRKEQEDANGKS

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