| Basic Information | |
|---|---|
| Taxon OID | 3300020160 Open in IMG/M |
| Scaffold ID | Ga0211733_10251376 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3392 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001338 | Metagenome / Metatranscriptome | 719 | Y |
| F002038 | Metagenome / Metatranscriptome | 600 | Y |
| F015597 | Metagenome | 253 | Y |
| F058813 | Metagenome | 134 | N |
| F098917 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211733_102513762 | F058813 | N/A | MSTMAAPTLVLIAGFARAGKDTLASGILEWSTRPSRKQNFADYLKDASNDFLMSLNLPGDFHNEAFKVQNRDFLVAAGRLARSIDVDIFAKNLANFCPINMDPAGVAPETVVCSDLRYANEVEVCQDVLIDLGWKVRTIYVSTAGIGPANPEELDSIAEIRERHSFDLELTFAPNTRNTIMQEGRYIAKTWRL |
| Ga0211733_102513764 | F001338 | N/A | MEPNNDRKPLKSIETAGTYKLKLIKPAFDKVKAWEDGTVSCRLFFLDDQGNCLSKSYSSKWAKPLAMLVGKFSGKYTEELRLDATPAEFMTYCEPAFGKTCLVGVEATASGEYNGKPQYKYKLTFPKGGQKPVVSEPLPENPPF |
| Ga0211733_102513766 | F098917 | N/A | MTNREYLRNVLTQLAGEVAALRPTPEDAPRAYSDDLHNLQTAIDAAAAELERLDAENIEEAYHIKPVYDRIKAVIAHERVLRNQLDRVALAADNALDLCNLLSAHVEEHNPNEDDEAL |
| Ga0211733_102513767 | F002038 | AGGAGG | MADVPKGIATIAKTVPRQFALLLLLDGFPYVEMTARKSADFLTDLNAWKRKTYPSLSRSNVRFFTLAPTGEVKELTFTK |
| Ga0211733_102513768 | F015597 | N/A | MSDPKPADDFDPFDPIKGAMRAMQQGNMLAAKDARIRQLEERLEFMREAGDQLWYCFRHAQTIDADQLMKAIEEWQEARNHG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |