NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211733_10247758

Scaffold Ga0211733_10247758


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10247758 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1599
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F001019Metagenome / Metatranscriptome804Y
F001460Metagenome / Metatranscriptome690Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_102477581F000441AGGAGGMRMSDVYINDQLSQAQKLLWGGSETENIEAHNIIAKLIKDRIEQVEQ
Ga0211733_102477583F001019GGAGGMSYEPSLEILEMEYSCSPGGVDTFEVYDKTDVPLSVPIFETESLTEAVLYCYNLGKDFTVKTLAEWNERELAYEATR
Ga0211733_102477584F000263AGGMQYYPEEEDTGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYQLTYQLSFAISEKGGQE
Ga0211733_102477585F063705GGAGGLTKSSVFLEYMKLHLISLNQDWEAAKNNEPLNEDEYDPSDDYFQGAIEATEHLLSVATDIMNSTNERYE
Ga0211733_102477586F001460GGAGMLGYTKEDLDRMTNAVHDAKLFYLRTPSDLMDKAPLRKDLEDTVDFLQGLWAEGYFD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.