NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10212558

Scaffold Ga0211733_10212558


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10212558 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6670
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005589Metagenome395Y
F029104Metagenome189Y
F030427Metagenome / Metatranscriptome185Y
F073560Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0211733_102125582F029104GGAMKASFKEFLNKIDFDDPSEYDFDADKTIDNNIKETIKNINKSSWCWTLFSCEGHNHDDDSKSLPYFVFIVKKKCIPVLLGMLFNTLDPKVDHTTEFPLCNTTWLNISWGFTDDKYAIVSAHWAHNFLEDETQHKKLLEDFYEMSFKILEAKL
Ga0211733_102125583F073560AGGAMLVCDVSAIDKLIDMYGENLSVQYNGEKFLLYDLRDEFVDNNKECSIDTHKVSSLGIRKDDVIIVSIDSHQEFSRDDTINI
Ga0211733_102125584F005589N/AMTKYKHSFWRYVPSSEKYKSEFKFVESIESDSDAVPEFHDHYCIDQVVDLTTGQMRIKNHSAPEYCVSKYVGFNLCLPPVEKANKQEIYVVIHRSSFSHKKIEFDEFLEPKDKRYNQEEWDFLLSVIEKRFDKQKEWAKEGIRVPSQYEDGTQVFKTQEEFRAFSLGRRAYFLYHLVLNYKFTHLIRKLNIGYTG
Ga0211733_102125588F030427N/AMKKFLVSMVAVFAATSAFAVDPIFTVKPPVKEGTGTFHAKSYGVEVNSVNDVKFVGIYDNKNGNGAVQKTLQSFSYQGLKFYTTATLSTNKNVDKAYAGASAMVEFGRVAPGLSVAAGVTMRGVELQRGFNVHNSYYPTVAVAVDPMTLVRNVMSTPANAEKTVRNFVKQVF
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Institute for Fundamental Biomedical Research
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