Scaffold Ga0211733

Basic Information
Taxon OID	3300020160 Open in IMG/M
Scaffold ID	Ga0211733_10167650 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020160 Open in IMG/M

Scaffold ID

Ga0211733_10167650 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3810
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3810

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045757	Metagenome / Metatranscriptome	152	N
F068842	Metagenome	124	N
F082697	Metagenome / Metatranscriptome	113	N
F088907	Metagenome	109	N
F093860	Metagenome	106	N
F099291	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_101676503	F082697	N/A	MDINNLDEEQMLELQKKFEENRKIILSMDPEEFLERIIKLHDSTDVILEGYDLSTEISGGQGISMAGIIRLRNALMDSVEWITNNLTEEDPEEEL
Ga0211733_101676504	F045757	AGGA	MRKILAILGLFILATSSFAHQEEKKKDPIYTVISTKYVLTSTIIDDFFRAAKITTYSYNKEEINKIKIPKFQIWEKNFDDTKFLLEKFLSVQFDTDEKKSYFMVKKK
Ga0211733_101676505	F099291	N/A	MELKDAPVRTSLEMIFKQAGIKSYVIENSVSGVISMNLSEQPFENALKLIMRANTIPLTYTKENDVYIVKARVFTEYKQPTPEITLEQPRGIMFEKIYLNHIDPFDLQAVFGKILFINQFSRYTGGGGGRNF
Ga0211733_101676506	F088907	GGAGG	MSHFYRQRSYTFNETDELLTEMKKEMSNFLTKEEAELILNRRYAIIDPAPHRMNEEIKVLHKEIDDLRREIYFLRTQLNKIQNKFDIDEPTL
Ga0211733_101676507	F093860	N/A	MAKHIVFQPVDLESDDSIKETVLWAASFQVHPDIEPTLPEEMLALVKGKSLISYPLAYWNNEFHKLGFELDIDFPYCKEFVWDFILPDAVRITIKAKDINTNYNQIIIPKTLAKKLLDEMNLPLFGKMHPEKFHKKLIAYIDISQDEYDLEEKIFEVLTELEDLCSECVSYESFIEWKVS
Ga0211733_101676508	F068842	N/A	MWYKISQQQSFDNLAASSSPSMVYQGASQGIKTDAAGKAAVQKFMNDGIPTAIRDVQNNKMVTLAHGNLTNGQFSIVDQNGTGIDQNQYVQWANQNGLNPNNLLLSCYQGAANTGAFKSLTSYRGKLMVSTSVNPDENGNFTVFVSGG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211733_10167650

Overview

Ecosystem & Geography

Associated Families

Sequences