NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10088024

Scaffold Ga0211733_10088024


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10088024 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2500
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058813Metagenome134N
F065732Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_100880242F065732GGAGGMEKELSMEERILWARRAGLSQERINFLLSCPKYTRAGRDGRDPIIKTENPNHHLQKLVECWWLRIRRRKTDILHNLGKDLETARRHRDEMLTAYDLGLPIPHLNNK
Ga0211733_100880243F058813GAGMEPMAAPTLVLICGYARAGKDTLASGILEWANRPSRKQNFADYLKDAANDYLMSLNLPGDFHNEPFKVEHRDFLVAAGRLARSIDKDIFAKHMANFVPIQMTPGEQAAETVVCSDWRYGNELVVCQEIMHDIGWKVRTIYVSTAGVGPANNEELDSILAIRERHCFDLELTFAPNSRNAIMQEGRYIAKTWRL
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