| Basic Information | |
|---|---|
| Taxon OID | 3300020159 Open in IMG/M |
| Scaffold ID | Ga0211734_11168240 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6474 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (25.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014726 | Metagenome / Metatranscriptome | 260 | Y |
| F014837 | Metagenome / Metatranscriptome | 259 | Y |
| F016141 | Metagenome / Metatranscriptome | 249 | Y |
| F024095 | Metagenome / Metatranscriptome | 207 | Y |
| F088525 | Metagenome / Metatranscriptome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211734_111682401 | F014837 | N/A | MIQRNINPKPRFVTLTASVPSTGAFVGVPLATLHRASFFRFPQDSIIHYVSINSTFLANGVASQVIGAIAYGQGQDNIGFNLGAGIDNTTDEIIWRDELLNPVAGVVTADKSTQIMMNEYFVHTGTGIGIYVNGLSGNANINATIAFNPIAEWVNFREPTTGARI |
| Ga0211734_111682402 | F024095 | GGCGG | MDNTNSLPFDYVVTATTGAAAGSTVSTTLIMQADSRFELMGIMGTGGINATTENSLQYPNSFTVSIRDQTTGRDLMSAPVPQRILCGNAYKQLAEKRGIIFEPQSNLLFTFTNLAGGAANNITLVLKGYKIIL |
| Ga0211734_111682403 | F016141 | AGGA | MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFVRLTATGTNSVSFYSNPIGAADPGAGSPPLFKTLEQTNLVKNASFGQEYFALTQIRTYAGFVCQSRQPSGLGTNVVYRGFTAKTDSAMEKLQTLLNTGVLEISFAQKLYYQIARPFIQCPPGFGIDIQSLASSRDGNAAETQGCDTNWWARPDYRATAVYNIDPIQIVEPEIQIQAAINFPNGNTPDFTNTGLTTASGNFTPNIELGLVFDGYVIRPSQ |
| Ga0211734_111682404 | F014726 | N/A | MGFQSESIISAASQRFGVIDYSRWQAIRWQWYSYVTYPEAGTGELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIASNDVDGFTRANIATLDTRALASDYLLGFVQAGVLNFSVGSRPFATIPKPFQYAPPPGSPLDLDNTYVNQISAAPVPAVGAEQVVGVPWVTQTKMRSNVYFTDPNILIEAEQQFNVKISFPSGNVPILATNVVDDTTNPVKIGVILDGLLLRPV |
| Ga0211734_111682406 | F088525 | N/A | MTLPIRQSELNAVGFTGYFPALSWRDRKEVAALTLNRVGRRQDAFLLEINNVNAVRGITYVADVPPLRAGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |