NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_11148212

Scaffold Ga0211734_11148212


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_11148212 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2674
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012967Metagenome / Metatranscriptome275Y
F016938Metagenome / Metatranscriptome243Y
F022591Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_111482122F022591N/AMKCENTVNVGDVVKSLDFVGVNDCYYVGLVMGVSEMDGTFRAKTIKRVWRGEVDYKKIYNDFFVAPLPGNHLLDDLEENIRDPRIQVVA
Ga0211734_111482123F016938N/AMKKQTETLLSEAIDLVNAADHVLANTMTQYDLSAKDSYDLAEKLERARNLLLVIGDRKYQAELNQIPVSEGVPF
Ga0211734_111482126F012967GAGGMTNEYRRSVLAPRARVSFDPSNPKHMLDFARFVKYDSWRDGCSYFLEDPYSDIPSMIRAKIADHTLSKLVEKV
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