NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10971413

Scaffold Ga0211734_10971413


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10971413 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1020
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006935Metagenome361Y
F040624Metagenome161N
F047676Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_109714131F006935N/ANNNTTNRYIMDKRYAKQIIEWAEEAKQTLTIRKEIIIDNSVNNEQLGIIIRQMYKAKVEAQDEQIKHTKQNTK
Ga0211734_109714133F040624N/AMKSEKYMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSVRLEVLKEKFAKIEKQITKSKNKKDENK
Ga0211734_109714134F047676N/AMELIITLIVLIIIWCIAFMVGNKQGANRIVNQIKKDGGYYDMEYTSSAYPILDPTSSINNDTMGTIGSKPKTQTDYQREHKAEAETPDIDFMYNWIQEKSGKKDPIPKKENPKQFNGIKTEEPFVKTRTKRK
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