NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10845781

Scaffold Ga0211734_10845781


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10845781 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2401
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011368Metagenome291Y
F034820Metagenome / Metatranscriptome173Y
F061653Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_108457811F034820N/AAGLDLEVKEADLVESMGYVLTLADDEPEDFVKRALKKPVLHVESWV
Ga0211734_108457812F061653N/AMYYPYKYTVVTDVSSKEDAKLDDQGRQILLETNNYQVARKECIQWAAYDDIQVWMLGSLGQTIWDCDGASEAFGRFPKTAEMA
Ga0211734_108457816F011368N/AMNHSLHHRDIAGAALNPGDHCLVTEHNRLILARVIKCYESSNGVQLQPLNSSAGGRRSKPRQKKIRRECYNVYRLADTEITMSILRGAV
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