NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10736473

Scaffold Ga0211734_10736473


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10736473 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2471
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015965Metagenome250Y
F024254Metagenome206Y
F039998Metagenome162Y
F089863Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_107364732F015965AGGMLVDSKKKQLSEDAIVMIAAQETKSQHPASTVYAALVKEMNMPGTSLVRDGNTLFIIHVGQGRTGIFRALNADTARNYLENSYAFIQGAYKMGFDVLVSEFEDPTIFNIFKAISRNPPQEGMGYRAERTKKGFRVTVKLGPKRAERE
Ga0211734_107364734F024254AGGAMNFIEIFNYVAKVARPAHAKSSIAESMEDVFQEIGLDSLDGLVMLMYFDELYGIDDAVSKEWTPKSVQELHDLVMANKTKEPASMEEVVEVCK
Ga0211734_107364735F089863GAGMCEAYAAQQLAMNTPEEAWKDWASGLKAIDIFVNEGIPGPQIYENWQDWAQALVGAVNESTQETAT
Ga0211734_107364736F039998N/AVFTPSTGKIDMRQQRREIRLRFASNVQGGDYQMGKVLLTVTLGDSRPYGS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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