| Basic Information | |
|---|---|
| Taxon OID | 3300020159 Open in IMG/M |
| Scaffold ID | Ga0211734_10672531 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7818 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (76.47%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000368 | Metagenome / Metatranscriptome | 1223 | Y |
| F010680 | Metagenome / Metatranscriptome | 300 | Y |
| F045716 | Metagenome / Metatranscriptome | 152 | N |
| F064680 | Metagenome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211734_1067253110 | F064680 | N/A | VEEAILQAKLPEVIKEALINELPNFVEFVDETTNKIFNPSAIWFESIQFADYVAQLATHLREEHGGECREEIAGKLIIMSENFKELAEHAMKILDNSEKSMKHGA |
| Ga0211734_1067253114 | F010680 | N/A | MLTMCSLPKEQRDYESEWVFKQVIVKLSQEEVRVCTTLAVERWLTKFGSIDRPNYAAGKKFGKLEPEINANIRANVAEWAVAREYNLSWSVPWYPNELHSKRKNIPDVGEFEVRTVRTQSAIPFWKKDAGRTIFGVKILDEEYYSIVEIFGSFKADDFMIDEYADASIDGWRVPIELITGGIDG |
| Ga0211734_106725314 | F000368 | AGG | MLETLKQVSLTWFRAAAASAIALYLAGETDLKTIGFAALAGFLGPVLKWLDASAPEFGRGAE |
| Ga0211734_106725317 | F045716 | AGGAG | MSDNSPIQINFKTKKDGMLINLRAQDGAELDLLLDQLTQRIAALVDLEKTVEGMAVVKDAFPNSVPIQGTTAVPRPTQAAPAAGAPDCSCGSGPMRFVPAGIAKATGRPYKAFYACPKPQGQACQNKVTV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |