NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211734_10654051

Scaffold Ga0211734_10654051


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10654051 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12196
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051128Metagenome / Metatranscriptome144N
F054848Metagenome / Metatranscriptome139Y
F080024Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1065405119F054848AGGAMSTATPTQAASLYTEGKSVVEVAQELGITYGKARKLIADSGTPIRNTSDRLKGKTRKAK
Ga0211734_1065405123F051128N/AMAHTPDLPKSEQEFLATLVKDQLWSRVQDLHEAGWTLQSIADGFVPPRRRSTIRSWVVKEITRHEFITATPTPPVKKPRYTRQRPKSPGIPHDEQLRIARLSPLARRYRSRTTTSSASFTANNELTVIAGELYLKGVTVSELARASGVTYRAMKRRVDKAVNYHE
Ga0211734_106540518F080024AGGAMSVVATLLKNKAPQAAWLVTVKDLASGETRHAAHTSLGAAKKTAVAFTNSLLDISRTRLPWVEDEAQKADGIQYFSAEVDG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.