| Basic Information | |
|---|---|
| Taxon OID | 3300020159 Open in IMG/M |
| Scaffold ID | Ga0211734_10570718 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3190 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F002387 | Metagenome / Metatranscriptome | 565 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211734_105707182 | F003422 | N/A | MTNELVSSKYTFVCDPDECDSLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIAPSTQTKEEKMEETTTPAVTVPDTYNSNLLVTYKVIRGYSDAEYATDKVASIEWDLHNARQNSKHNSVLQGKIDTVKDIIGEAYADSDDQETLRAIAEALGIDLTREVEWSATIEVSGTITLDLLADSDTDVEQEIYDNLYVDSQNGQIEIVDTEVTNVREN |
| Ga0211734_105707183 | F000311 | GAG | MYFELTAPDRLSMEMAYWDAQVMGLDPTALTPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTRR |
| Ga0211734_105707184 | F001043 | N/A | LKVIHQTTSQQDTQGDNMSDYKDGFDDGYKFAREEMMEKLSEIDINDIDSWILDRLCEMIEGGKL |
| Ga0211734_105707186 | F001125 | GGCGG | MGDRANFGFKDSKGDTLYLYGHWAGHNMLANLASAVSAAEPRWQDESYATRIAISNLIGDEWAQETGWGLSINGILDNEHKVPVINWTDKKFTLMEEDLSTVVFSLSLADFVQKYSRLVM |
| Ga0211734_105707188 | F002387 | AGGTGG | MASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDKFIQDEFNKFYELKEGDEGYLC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |