Scaffold Ga0211734_10530622

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211734_10530622

Scaffold Ga0211734_10530622

Overview

Basic Information
Taxon OID	3300020159 Open in IMG/M
Scaffold ID	Ga0211734_10530622 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3264
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	0 to 12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035227	Metagenome	172	Y
F035278	Metagenome / Metatranscriptome	172	Y
F090104	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1053062210	F035278	GGA	MNDKHIKKILDKQFKIANLDLKYEDVCNNQTPNWLTKYSYAPEDNEKWKNWTMKYMREKMKLTKDKALIETAWIDLNFGLRTSTRSVKNKKNK
Ga0211734_105306222	F035227	AGG	VSDNSSNIHRAVNVTTLSEKEIKKYSLVKTGDLFKKDDYLLLYDDQYVKIGISSILFKNKVLKENTVYRRK
Ga0211734_105306225	F090104	GGA	MQEVDIIINKLIESIKTVDSNKAIPYLVKDLDKHVQEAYAELYKYREQKSVYKPLNDNKRGHCC

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