NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10411920

Scaffold Ga0211734_10411920


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10411920 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14135
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012098Metagenome / Metatranscriptome283Y
F019997Metagenome / Metatranscriptome226Y
F030064Metagenome186Y
F084140Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1041192014F030064AGGAGVTNTFMTIGIVAGALISLGVLLSPLYKRVKRWGQWMERFMRDWEGEEESPGRDRVSGVMERLNNMDGELSQNGGFTTVKDRVDRLYENQALIMDAFAEMHERLINIENCLMNNPTEEEK
Ga0211734_1041192015F019997AGGAGMDINTLKAAGATWLRASLAAVAALYMSGISDPKTLANAFVAGLLGPAAKFVNPKDPSYGFGSKK
Ga0211734_104119206F084140GGAGMYTIGKLITEWQKSHNKDLLDEVVMGTEVFNAIAKELKKRA
Ga0211734_104119207F012098GAGGMPKVHNIGPKHFVQLIDLPVIWGKKFVVRGWTQEIEEPFRTSEPLLVRLPKYKALAFGKWTGFKTEEDALKSALNTREVTYDDFTEEAGWTAPDSDREESLNDINARLNSVDGAVHVHDWQTYYRMAEESQQRPS
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