NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1376949

Scaffold Ga0211732_1376949


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1376949 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6271
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F002622Metagenome / Metatranscriptome542Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_13769492F000369GAGLSEHFDRMNRVVEELLKGSTPTQIATTTGIQRKEVLELIDDWKDVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADQSGQLGIKSGALKLIADIETKRIAMLQSIGVLENNEIASQIAETERKQDILVKILKETTSTCPKCKMEVAKRLSQITGVIESVPVEEADVV
Ga0211732_13769494F000376AGGAMSTYQEKAKECRCCGKHVPLPTVLKEYNGIVLCPTTFSNVIEYKRIWKLAGHRPMGNIRKHFSEYVQQIVEETIDKNEDGTL
Ga0211732_13769496F002622GGAGMTEDEANDARLAYYLEIGAVSFEGVDESGEIIYSISDSAKVLAPELWQSHIDYVDKSLIELYEQGMVEIEYNEDLEATIHLTPEGHKVAKEKGLIEMDLDLDIPND
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