NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1327541

Scaffold Ga0211732_1327541


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1327541 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3697
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003688Metagenome / Metatranscriptome473Y
F017301Metagenome / Metatranscriptome241Y
F065439Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_13275411F017301AGGAGGMNTEQLKALLASYGRSVLASGLALYMAGVTDPKDLWTALVAAIAPVAIRAINPNDKAFGLLPDAKSVEMALKAAKAPAKKKAAVKKAAPKK
Ga0211732_13275415F003688AGTAGMRRAFHSILPPNNFKVELIDNEHFLTIKLDEYVFARMVHDDKIKALQYVLNAKKALEMEGAIVLVTREAIK
Ga0211732_13275417F065439GAGMIINSLAQMETIVSKNKELGWIGWDVVERKRSDLARTSPSGVRVKNAWYLQKTFNLNRNGWDIPNKYGQ
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