| Basic Information | |
|---|---|
| Taxon OID | 3300020141 Open in IMG/M |
| Scaffold ID | Ga0211732_1270766 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18140 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001106 | Metagenome / Metatranscriptome | 776 | Y |
| F009961 | Metagenome / Metatranscriptome | 310 | Y |
| F012456 | Metagenome / Metatranscriptome | 280 | Y |
| F070122 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211732_12707663 | F009961 | GGAGG | MTVDYKIDAMFELRKFLWKELKDAGIFDQYDYYSDNLGREIIPIIPVQQSPEMDQFLNGKKHIVYDKIGMSFEDIWLIACEKVLFTIYSTDITEVYEIRNLMMDLFRRMDESARDANNARDTDKLIFHSIHVVETSPIEPSAELQGFISTDVILEVKYSRTTDSKGRFN |
| Ga0211732_12707664 | F012456 | GGAG | LDSSVALIQTASGLERLMAGSAPGVLRDSTVAQVSAFLYYEAAVLSKLTTNAEFKNLFKTTIFNQIEKDFGEYIDSQARVRPRSLHHVYEWNKVGVPTSRLFRLSRFDTDGLSFRINYDFKLSKSSVPSKNKKQKKKYIFANKALVMETGMPVVIRPRSAERLVFELDGETVFMPKGTSVTVKRPGGAQATNQFALSYGRFFGGQLVNSSIKSSGLQRIFNLKMTKALNIPISIKKVQYSFSPGKIRTQADASLQAAFGGSL |
| Ga0211732_12707665 | F070122 | N/A | MSLATSLMPMKLDIYLQLDTQDENTGAIKKEWIFTRSVPCAAKGIISNSATGRGGDKQTFNNRYTNEQMLEIRTPDQITYREKITNVRDMSGNVIWKEINYPNNTPTVFEVISSTPITDPFGNVLAYNSVAKRSENQEIGF |
| Ga0211732_12707667 | F001106 | AGGAG | MSFDTLKVAELKIIATDFAVDTEGLKNKKDIIAALAEEGVTWSVYQSTLDAIEKDTEEIEILPKFDPKAQAEDTILVRMTRENMRYDIHGKTFTKDHPFVAMSEEDAQKIFDTEEGFRLATPKEVQDFYN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |