NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1126486

Scaffold Ga0211732_1126486


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1126486 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1274
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021755Metagenome / Metatranscriptome217Y
F044492Metagenome154Y
F078708Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_11264862F021755AGCAGMKRTILKLHDKKYADLIDHSVRECIQKKENYDIEYKGKVMTLTPEELKTKCVGRQYIAVPKFGDKPYHLLSYLWEPIKTT
Ga0211732_11264863F044492N/AMSDEKQVTVTINRQPSFTEIWHEGSVQFNNTTYMFWLINPRGLDDQGREYEMEVRWWFKQVPMEVRKLSEQIINDFKDAKDDSANSTRNSKSI
Ga0211732_11264864F078708N/AMIVQTVHEILNPFDVEVKQLGYGVALFMIVGSIHSNPQFIIRFYNTGQLRTVDQNDISVYGNPTAGENLDPDVVSKLPANARRNTDFLKK
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