NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1066753

Scaffold Ga0211732_1066753


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1066753 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1992
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001754Metagenome / Metatranscriptome641Y
F003291Metagenome / Metatranscriptome495Y
F005389Metagenome / Metatranscriptome402Y
F007113Metagenome / Metatranscriptome357Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_10667532F005389N/AMANKSKKAAKRGNIYETVSNNIQKITRPSGTVSYRVRVSEDGILYSQYETSLKAAKALRNSWVG
Ga0211732_10667534F001754N/AMNTIYNNFAASKMSNNPKFSVMVEFTDFMGNQHRIVCNNRRKLAEANEFLKMFKTESTKINKILGEYPVVMGMFPKKYHKQIKLELASAGFGSVSKFLIK
Ga0211732_10667535F003291N/AMNTNQMNEKLVSVFNQDELAALMTAMAGYINVKRKQGRSTGIESVVFNKVTDALLLSNYMNATVIDRGNGKMGVAEYKMSEAQLDAMYESDVRAHS
Ga0211732_10667536F007113N/AMKLNLTPEELKTVEIALNELFNSDRWISGRKEADIDKIADRAQYLLHVIESYNKNNKK
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