NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1047738

Scaffold Ga0211732_1047738


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1047738 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1365
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057903Metagenome / Metatranscriptome135N
F066594Metagenome / Metatranscriptome126N
F097206Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_10477382F097206AGGAGGMIHKANRPPSPEELKQLLIMAFGMGMVVASAYFILFVVK
Ga0211732_10477385F057903AGGMVLGNRLESDISITPPKMKFKNSGNSSVQVEIISDDVEIRIGEMKWVGVAYTRDGKSKVYVRTKAEFKAKFIPVIEQAP
Ga0211732_10477386F066594N/ALNKHPKLYIAAQEQLFAKFQSRSIPIQHWSKYLMTPKELSLLFLKLEESKSVLQQIAITDLGESGELARKQLGIQ
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