| Basic Information | |
|---|---|
| Taxon OID | 3300020141 Open in IMG/M |
| Scaffold ID | Ga0211732_1008289 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2902 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004924 | Metagenome / Metatranscriptome | 418 | Y |
| F005701 | Metagenome / Metatranscriptome | 392 | Y |
| F007524 | Metagenome / Metatranscriptome | 349 | Y |
| F010227 | Metagenome / Metatranscriptome | 306 | Y |
| F026201 | Metagenome / Metatranscriptome | 198 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211732_10082892 | F005701 | AGGA | MLTNCIAYAKLVYNKKINAYKVQFAFNVHKEVVGTNYKFKFPVQSKCNYVSGDLLAEDLQAEVQRTIVTAQKSLRTHNIVFVE |
| Ga0211732_10082893 | F026201 | AGGAG | MQNAKQYITETGDGYELCITLDNEQCAGVNVESITMFISNVNEAEDGDEASYYDGDLAVNYNITALQNDETAQTMGTLLLRNIHSDDEVTAVMGQFYWEGAFTQRLNAILAERGFSANTVHTSEWGMQDEGRASYDAYELADEIRNIMQTATA |
| Ga0211732_10082894 | F010227 | AGGAG | MQATTFNVSDKLTFAHTDTDEDSVSTTYDCNVEVQLAGDSIWDCEIEAVTVTSIHIHETFWDGDSSIHITVCYNVDGDTEYEGSWRLYTDSGFANAISELLGTQVFFTEQGMQDDGYASM |
| Ga0211732_10082895 | F004924 | AGGAG | MRDAILAKLAEVEVMLLEATLDGEQLAELDCFAEVDGALSTLVQAVDYYVD |
| Ga0211732_10082897 | F007524 | AGGAG | MRKLSNTHAVAINKLMLPLISTVAHIDDDNDINMYKMYADDIAHNVNALCQFNTTLDASVLHDNIMRQDTCPREHFYAVLKYIEDNKLIAKNMFCCS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |