NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194113_10004001

Scaffold Ga0194113_10004001


Overview

Basic Information
Taxon OID3300020074 Open in IMG/M
Scaffold IDGa0194113_10004001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19441
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (8.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004093Metagenome453Y
F032580Metagenome / Metatranscriptome179Y
F067540Metagenome / Metatranscriptome125Y
F067724Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0194113_1000400120F067724N/AMKEYFEAIWDLISLTLFGERIMTGESINLEKGRKVNFKTTYPDNQPDENNWNQMFRVSSLHGVHQNVYFGK
Ga0194113_1000400127F032580N/AMKLQFTKHELQQLDTIEQAWDGDELKIEDNNVKVWLVLPENRRYNGDYVVENRINGVWLQTPGYFE
Ga0194113_1000400130F067540N/AMNNLTQYLNEMKAELQELYEDLDSELRQTDNQDLVDDSYRNITSKLESALSEMETLIGDIDSGVYDDNINNFDSDGMLEDEE
Ga0194113_1000400132F004093N/AMIIQTIHEIVNPFDVEVKKLGHGVAIFMIAGSIHSNPQFIVRFYNTGEVRTVDQNDIQIYGNPTTGEPLTPIKGAIDASKTNRLNG
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