NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0197907_10333924

Scaffold Ga0197907_10333924


Overview

Basic Information
Taxon OID3300020069 Open in IMG/M
Scaffold IDGa0197907_10333924 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1434
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062239Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0197907_103339241F062239N/AMKRELPLVVELAEPKMVAGEVEIQLSSATHSGGKSNTFNWIGVLSDLVNDVTVDDVIA
Ga0197907_103339242F062239AGGAGGMKRELPLVVELAEPRMVAGEVEIQLSSATHSGGKSNTFNVIGVLSDLVNDVTVDDVIA
Ga0197907_103339243F062239GGAGGMKRELPLVVELADPKLVDGEVDIQLSSCTSSGAKSNTLNAVGVLSDLVNDVTVDDVIA
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