| Basic Information | |
|---|---|
| Taxon OID | 3300020021 Open in IMG/M |
| Scaffold ID | Ga0193726_1000041 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 286399 |
| Total Scaffold Genes | 298 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 212 (71.14%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9871 | Long. (o) | -107.0011 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000290 | Metagenome / Metatranscriptome | 1362 | Y |
| F000386 | Metagenome / Metatranscriptome | 1203 | Y |
| F000407 | Metagenome / Metatranscriptome | 1172 | Y |
| F026062 | Metagenome / Metatranscriptome | 199 | Y |
| F047183 | Metagenome / Metatranscriptome | 150 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193726_1000041113 | F000407 | GGA | MLRLTTAWLCGAVVLAGCSGSGYAVRPVPRIAADTVGKPVSVLQEAFGEPRKVDKTSTKLVYVWFLPQKPKEGAPSGFQGCEMEVTVDARSQRVLGYSLSNIGWSTCGDVQRRIRVAQR |
| Ga0193726_1000041116 | F000290 | GAGG | MGYRDATLGVMSKSPNARRIGGPLSWDQLSRPDAEQCQRFLAESLSLLLGDVLRAILSDASPSVAADESAIERYRNLADSLADGESRRRTGLGLTRAGLAKRCVTWLKLLLTPAPNVPSTAAMREFVDALGLFPALFDSEPSARSRRARLTWLLTHDRRLDASTREAATALIEACEHLGVLLWPDAETA |
| Ga0193726_1000041129 | F000386 | N/A | MTEMAPYSTLNVPPDEMVKYIQDLMTLPHGEIAAGSAMALAQRHWGGDTPLARAALLRWGALNLAFQDKRLESWTVTRERDRIQVPAALVAAAGIAPLVLDNERAVFDIPALLDATLEFQPPAGQA |
| Ga0193726_1000041142 | F047183 | GGAGG | MRGNMKAALILALPLLMIGTALGGEGVQVKITNDGTQDIVVTVYDMNANPRVILLRNARINGFTSVPVSAIADATGRANLSWTATSTDATSAKCGHDDTLALNNDSAVSVHADSSCSELAAGTG |
| Ga0193726_1000041150 | F026062 | N/A | MQYNEHQLAELAATVAAGLARGSDLLDFSSDREKIRASARELARVSLLIARHILVGAHAAALKVDELELLYDDADFL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |