NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193732_1015780

Scaffold Ga0193732_1015780


Overview

Basic Information
Taxon OID3300020012 Open in IMG/M
Scaffold IDGa0193732_1015780 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1304
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9223Long. (o)-106.9536Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F002111Metagenome / Metatranscriptome592Y
F008327Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0193732_10157802F008327AGGAGMSMPKGDTPEKANDFYLYLQGHQQTTHPVQTWHVDWMSLAWLWGFLAALVVILFLWVRQYRTTRQRTGLYPVDSFGGWTTEGAGPATGFFLLFTAIIVGFAVALIVGHIVWGQKF
Ga0193732_10157803F002111AGAAGMVATSILPFVSYSSMTETVIPAAKWPTVYSSLQALKGHVQEYPGCQGFDVFVRAEGDGDVLVNCYTTWDTAGQLEVFLERGYTFERLLADIGSGLGPARSLVMEKVF
Ga0193732_10157804F000280AGAAGGMAQKPDDQQRPARPLIGYRDVGEDIRHGRSAMTRAWIVLAILIVIYLAWTLTVYFLEPGL
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