Scaffold Ga0193730_1049517

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193730_1049517

Scaffold Ga0193730_1049517

Overview

Basic Information
Taxon OID	3300020002 Open in IMG/M
Scaffold ID	Ga0193730_1049517 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1213
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9223	Long. (^o)	-106.954	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000569	Metagenome / Metatranscriptome	1018	Y
F049978	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193730_10495172	F000569	GAG	MDLHIKKVWLPGAASCLLLFGFYYVLIWLPFDKNRFQFMAIPYLVLPFAGALAAYWSRRMKGSVLQRILSALFPVFAFVALFAVRIVYGSFFEGQPYTLPHFLAGFSVTLVFIVVGGLLLVLGAWPFCRPHLREQLP
Ga0193730_10495173	F049978	N/A	ALDRFQGPFFRRGEGRVDEGFTQIDLAAVPDVLGEALQQPIEAARALPELEATMASLVRRIARWQVVPRRARAQDPQDAVHDGPRIGPRPAAPIQATARAEGRFEHGPLDVGEVHAVEYDGDPTDVSR

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