| Basic Information | |
|---|---|
| Taxon OID | 3300019938 Open in IMG/M |
| Scaffold ID | Ga0194032_1000003 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW8Nov16_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38178 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (38.64%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware | |||||||
| Coordinates | Lat. (o) | 38.7906 | Long. (o) | -75.1638 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006585 | Metagenome / Metatranscriptome | 369 | Y |
| F009068 | Metagenome / Metatranscriptome | 323 | N |
| F009443 | Metagenome / Metatranscriptome | 318 | N |
| F028154 | Metagenome / Metatranscriptome | 192 | N |
| F101054 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194032_100000314 | F009443 | GGA | MGEILLMLLTGGGSTAMGAMLKGGFGMLFESRRQKHELEVARESRANENFLKLQAELSKGGNNEFRDFSRRIIAFIGIGTLCLCILLCTLFPQAEFLSITNAHGEGRTELLFGIVSWPASQDPITLSSGHLAYMGQTALMGILGFYFGPSPHRR |
| Ga0194032_100000318 | F006585 | N/A | MALNKLHKKDFTIAVKTGTDANKSKFAKECNKGECYFATDTKNLYIAESTAGASDATLTQLTPTATGV |
| Ga0194032_10000034 | F009068 | N/A | MAILQQSSNGDGPITGWSLEPCRPGQYLAICLDVKDSFGIQRPKYEDPSQIETLDVCRFLFGTQDGQMVQTGEMKISAHEKSKLTGVLTSWLGSAPGAGFDTETLRGKGAMINIVEKTSMKGRTYSDITSVTPVMQGMEAQVPQASNFTIPGGSPAPAVVQQPVQPAPAPAPQATTTVTVEQPQTVQATMGQQFTAPTVNPPF |
| Ga0194032_100000342 | F028154 | N/A | MGLGLPRGEKIILTCGSRQADIWLDHEELAWRVKIDRDLPETTYPHLENAILSAETLLKEVP |
| Ga0194032_10000036 | F101054 | N/A | MEKQILEQYHPILLSKEEVKEIFRLGSDRSLRNLKVEFGLRKKGRHYLTKDVRRAIHILEAQA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |