| Basic Information | |
|---|---|
| Taxon OID | 3300019887 Open in IMG/M |
| Scaffold ID | Ga0193729_1000021 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 76346 |
| Total Scaffold Genes | 84 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (63.10%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9225 | Long. (o) | -106.9538 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004298 | Metagenome / Metatranscriptome | 445 | Y |
| F006413 | Metagenome / Metatranscriptome | 374 | Y |
| F006646 | Metagenome / Metatranscriptome | 368 | Y |
| F007316 | Metagenome / Metatranscriptome | 353 | Y |
| F018294 | Metagenome / Metatranscriptome | 236 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193729_100002132 | F006413 | AGGAGG | MLRKMFSLGALVVVVVTFGVGNASAQPKNSHSPAVTHSNGGWTDGFSDGRL |
| Ga0193729_100002147 | F006646 | AGGA | MSGQLLLPYMALWASLLRALLVQARIAPPLCGRCGRKLERSQLGETICNGH |
| Ga0193729_10000215 | F007316 | AGGAG | VRVVGIVAMAAAAVIVVAFSGTSSASPKARKVCGGVPAYTTGPEVVFGRPATLAAAQKLQKQVMAQGFTFTSIEVGCNEFRVVIRGYDTFATAVAIQEEARKSTFHPTVECYEAPDKNGELEVAMAHEPNLDSANATVSLAASYGLVNAQLEADPCGGYEVMMKGFTDAAQANAFAAEAYSVGFNAHLEPDS |
| Ga0193729_10000217 | F018294 | N/A | MLTLQAILLTTSLLMVLAMVGSLMFLATMRGRIEPEPIAVESVDLPL |
| Ga0193729_100002173 | F004298 | N/A | MRAESEVWQALLRRKGLSVTELAGELGVTRQHAHRLLTGRRPAESQREDLEHALALGTPTAGKPLFAIGELEDNGELEIVPAGDTQPLFANREVATDVARALDVASLHVCVLPVWPAYGWRNLVAFHAAWGADPEPRKVFVVDDGDEDLPLDAVVGEIRAGLDATLRGRAKARDPAYLSEVESRLQRLN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |