Scaffold Ga0193729_1000018

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193729_1000018

Scaffold Ga0193729_1000018

Overview

Basic Information
Taxon OID	3300019887 Open in IMG/M
Scaffold ID	Ga0193729_1000018 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	79607
Total Scaffold Genes	89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	70 (78.65%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9225	Long. (^o)	-106.9538	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001342	Metagenome / Metatranscriptome	719	Y
F004123	Metagenome / Metatranscriptome	452	Y
F100058	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193729_100001827	F100058	GGAG	MLLSFVYLAFSAVLRLLVRGRRSEFAKDVELLVRR
Ga0193729_100001881	F004123	N/A	MSVFDYRYELRRGEEVIATGHLTREQPFEVGDRVEIGGAAGTVRAVEPLLGERELRLVVQVWRAGTDS
Ga0193729_100001888	F001342	GAG	MSDGEQTSRIETFLYDADGNRTEEESIAVRGEVVELDAEGRVIASHKDLGWEVDPISLEGDAGESATRPKHEPH

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