NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182028_1494492

Scaffold Ga0182028_1494492


Overview

Basic Information
Taxon OID3300019788 Open in IMG/M
Scaffold IDGa0182028_1494492 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1932
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F007128Metagenome / Metatranscriptome357Y

Sequences

Protein IDFamilyRBSSequence
Ga0182028_14944921F007128N/AQYSDDGTAILSYYTTHYFPERTVESSLGLGAHRKLFSYLTMYVEGAGNLSLTSYVDSSSAAQAQQPLPLSSPAQKDLELPINVLGERVAFQVSTKQAGAWFKLQRFTPSVRTDPWAPVRGVN
Ga0182028_14944922F000781GGAGMLTVAQLAPLKDKDPYLYETLTKIVSAVNATSQNAGVDPATPSPAPAPIASLQVQATNGWFDLSITDPAASRPGLFYFAESDVTPAFSAPRVHFLGAARNLYLQLGNQTLYWRAYSQYIGSQPSAPVSFGSPPIAVAGGGASGPAPLPSSGSGTLPNGLLRGGNGFGTPTGARIVKQTIL
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