NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1096804

Scaffold Ga0181359_1096804


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1096804 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1087
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006935Metagenome361Y
F040624Metagenome161N
F047676Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10968041F047676N/AMELIITLIVLIIVWCIAFMVGNKQGVNRTINQIKKDGGYFDMEYTGAVYPYVTEYPTSSVNNDTMGSIGSKPKTQTDYQREHTKIEPHIAHELESQNEEENGDIDFMRKWIQEKS
Ga0181359_10968042F040624N/AMKSEKFMALYKRKKELQEQIVYWEKFQGVNWLGKWGRSVRLEVLKEKFAKIEKQITKSKNKKDENK
Ga0181359_10968044F006935N/AMDKRYAKQIIQWAEEAKETLTIRKEIIIDESVTDEKLGNIIRMMYKAKVETQNEQITKTKENARL
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