NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1074769

Scaffold Ga0181359_1074769


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1074769 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1278
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F004599Metagenome / Metatranscriptome431N
F083918Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10747692F004599GGAMAFNLSEYEDVATLNKWFISNFPSGRSDISVISHDAVNGYILIQATLWRDSKDTSPAVSNVAFGARESYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVNDEPIKNIYGKSGNSQIIEMALRKSFADDGKSASEPTTWSVGDVAEALSTKPKQQECTHGLMILKEGTAKTGKPYFGYVCSAPKGEQCNAKWAVTAANGSWFFREED
Ga0181359_10747693F083918AGGAGGMGYVEILDGSHYLARVENDKVTIELTKDRCAICHCRQ
Ga0181359_10747694F000141AGGAMTLFKCNGCSRKTEFLWLEQLDTPEGFKAYQCMDCGCVGIKNIAEALSIPDSTISRCDQCGSWQFKDLPCHTCELIGAK
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