NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1063571

Scaffold Ga0181359_1063571


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1063571 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1409
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004599Metagenome / Metatranscriptome431N
F009461Metagenome / Metatranscriptome317Y
F021981Metagenome / Metatranscriptome216N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10635712F009461GAGGMKINGLTVLWFMIATGLLAYAFNLWQTETYNRGYWRGRAMGWDMHRRMISIKQQSDEVFDYDKN
Ga0181359_10635713F021981N/AMPTTTEKLFNNATAIVHERGVVYGHAIYNMDRIAKSVSAYIDYPLSAHDIPIINILQKISRLAESPGHEDSIVDICAYMAIYKMCIEAEKDDQFEWRVGE
Ga0181359_10635714F004599GAGMAFNMNDYEDVATLNKWLISNYPMFRSDLSVVSHDPVNGYILVQATLWRDAKDATPAVSNIAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATRDDMRKVDNEPLKNNYGKSGNAQLIELALRKSFRDDAKSEGEPQAWSVGDAIATIPTQPQQQECTHGMMILKEGIAKTGKPYYGYVCSAPKDQQCDARWH
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