NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1014320

Scaffold Ga0181359_1014320


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1014320 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2910
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001754Metagenome / Metatranscriptome641Y
F003291Metagenome / Metatranscriptome495Y
F005389Metagenome / Metatranscriptome402Y
F010916Metagenome / Metatranscriptome297Y
F093862Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10143201F010916N/AMTVSKQIHTDLLGMVSKHDYSYMMSDSHSVWESGMVYEKHIIAKIHALCAIHREDAEALYNEVKAVAGPDYLDYDSNGYGLKYRVIKGWFKPYIGE
Ga0181359_10143202F093862N/AMNIMTVKYESELQIIALTKLLSAVYETPVRPRGRHSDRKSVLGFKWRKWSQNDIPWRMAERVTFYKVNR
Ga0181359_10143203F003291N/AMNTNQINQKLVSVFTQDELAALMTAMAGYVNVKRKQGRSTGIECVVFNKVCDALLLSNELNAVVIDSKPNPNAPMGSAAYKAYEAMYDSDVRAHS
Ga0181359_10143205F001754N/AMNIPNPFKNFSASKMSNNPRFKVEVSFKDFMGNQHRIVCNSRKKLAEANEFLKMFKSESVKIDSILREYPVSLGKFPKKFHKEIKSDLQSAGFGSISKYLLK
Ga0181359_10143207F005389N/AMTNKSKQAAKRGNIYETVSNNIQKITRPSGTTSYRVRVTEDGVMYSQYETSLKKAKSLRNEWVG
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