| Basic Information | |
|---|---|
| Taxon OID | 3300019784 Open in IMG/M |
| Scaffold ID | Ga0181359_1012651 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3056 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000919 | Metagenome / Metatranscriptome | 834 | Y |
| F004546 | Metagenome / Metatranscriptome | 433 | Y |
| F013889 | Metagenome / Metatranscriptome | 267 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181359_10126512 | F000919 | AGGAG | MKFRNIEFRWSKTNNKYELVQWYKDCNHKEFCCVVAFFDKGKEGYDMRTIGDRFFEDKDAWVVGKYALEFLNAIFQIEKDEEDT |
| Ga0181359_10126514 | F013889 | AGGA | MSRTNRNLEGMHSGALRFPHTFNEIRQLDGILHEEDLEDFPVSKVNHMKAREHNLPTAWTDQVVSGYYQEDYEI |
| Ga0181359_10126515 | F004546 | GGTGG | MSKEEEFPFDQFPWKLMHKDGKDNKDTRKCYFSTEEHRTKHIARYNLKKKDCTISYKYE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |