NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1011208

Scaffold Ga0181359_1011208


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1011208 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3214
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F016523Metagenome / Metatranscriptome246Y
F036685Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10112081F001326GGAGMAVYSVTQKYLLDDYAVLQLLTPSEIAVGQSITVASVDATFNGTYTVRALPQYLYIGIDTDGDLLYDINVPIANQVLYAKTASNVERVAATGTVTYTQTCTWVTAAQLVTYLGVQITNPSDDYTLITQAVSAGNDFAYRRRQEAGYIDSLTTSPGGDATLGTLMYCAALWRSRGSLENTFASFDGMGTAPQQSLTPIVKQLLGIDRPACA
Ga0181359_10112083F016523AGGAGMYQYFIISPRLGTPGDQFIPDDGVNIDALLDGGLISTDSVKKSSKVKSEPKEQ
Ga0181359_10112085F036685AGGAGMKVKLSIDLADGKPAREMHTNMLAIVDWEKTENRRSADGKGIGYTDMCCWAYTLCKLAGDKVPATWREWVAENPDMTITPITEVVDETPFIEGLGGEASAKS
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