NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1010815

Scaffold Ga0181359_1010815


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1010815 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3256
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008812Metagenome / Metatranscriptome327Y
F011214Metagenome / Metatranscriptome293Y
F057320Metagenome / Metatranscriptome136Y
F086678Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_101081510F008812GAGGMIQWVGIVITILGLAYTGIKDYQKGDIKFPPMPQKPALTKVVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYQTTPQPYQVESQTSVASSNRSQGASQYYYGQSPQAYANPIR
Ga0181359_101081511F086678GGAGGMSKYYIKCGTLEIIYSCNKCPRDAAMDAIWETNENDTLDEHMYLDERGYRDYVTADGHTCVLHTSHILKDAGWSIE
Ga0181359_101081512F057320AGGAMSYVGLYDDAGSKNAFYIIKDKKIGRKRVGFKEFENEQEAKFAHRVQKHLAQFDLAPMAYGDVGMIRKYDGELTAYGYLTEVARPMPNCRDEDCDGECFQSECSNGTTIDEVVYDLGEHGLEYTDSHKGNFGYVRRNGKRVAVVIDLGIESFGEWDESIYGEFDYDADEDVDSYGACNCKECQKFREEQ
Ga0181359_101081513F011214N/AKHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASIHDDNDMGEALAQGFKKFAWCDSDMKFAPKRPKSKAKAEAWRQALPKLVVINATKFVVCPEIRRGRAEITCTGTKDSIACDLCVRGLGNVLFPAH
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