NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1009281

Scaffold Ga0181359_1009281


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1009281 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3437
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F002598Metagenome / Metatranscriptome544Y
F006385Metagenome / Metatranscriptome374Y
F011487Metagenome / Metatranscriptome290Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10092812F011487AGGAGMANMYEDEMFDEYYSTTCPECQENAVDAYEEKCTHCLLEELSATYNEDIALEMSLGLDY
Ga0181359_10092816F000447GAGMGYIEIFRIDNEGAGWIDLDNATPDELFTLEVGLLNEGALFTTKEAD
Ga0181359_10092817F002598GAGGMATKLYTIESLLVGKNYRSRNRHFEGEIVSAEKREGIWYGENTEAYLIEVNDRTLRNKFATIAVKVGE
Ga0181359_10092818F006385GGAGMILDNGTLIAIVIALAGSLSMMLVFWKQNIAQQKEIRRLQVALRTERNKK
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