Scaffold Ga0181359_1009172

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181359_1009172

Scaffold Ga0181359_1009172

Overview

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1009172 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	3451
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020696	Metagenome / Metatranscriptome	222	Y
F020908	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10091724	F020696	N/A	VPWIGSLYNVNTIILEMKKLETCHHCGEEKENCFHGFIAMTIPIPEAEAKIEKWGRKDWWKNLEREDLTEEEMKELDGLCTYDQLLSTVGRGVQCEDCGKKEAELYDKYYPRVVS
Ga0181359_10091729	F020908	N/A	MFKRFFKYTPTQQEQQFIDIVNKLLLHPKTSLRMTPLTDKYFLINEQKHYYVLLKNNGIQITNSKFSFAKSLHPKAYDMIIESINTRMEEDRQALEDKLFVKETNMLEKVLNSL

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