NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1007900

Scaffold Ga0181359_1007900


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1007900 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3646
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001424Metagenome / Metatranscriptome698Y
F003662Metagenome / Metatranscriptome474Y
F006063Metagenome / Metatranscriptome382Y
F011843Metagenome286Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10079002F006063GAGGMTDLLTAMHLSVVLLDLKIRMMEAINEDRFDLAMTYHLLILVRTDELQAHKWAMSPKAWAIYETIHP
Ga0181359_10079003F011843GGGGGMNIALLTKVRQLFNVDYVPRSTNRHNQRQYIKALRLLGDKWLTHPHNQIQKIQ
Ga0181359_10079004F003662GGAGMKSKLATVVINDQEWIVLDTDESRDKKIFCKLMSLDGTIVWHTWVDINQIVGVI
Ga0181359_10079007F001424GAGGMEQQVEQLSTGYPQLWDERVFCHECQHSCMVEQRQSMPAEQMERHRKVNSKPLQWMFDQAKIRNGWATITWSEHQCGKTGLAAFPTDVKHRCHLFQAKASAVESEEWWLT
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