NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1005879

Scaffold Ga0181359_1005879


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1005879 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4047
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032541Metagenome / Metatranscriptome179Y
F061656Metagenome / Metatranscriptome131Y
F061834Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10058795F061834N/AMVHKKDLRKTLNSFLKASIRIKEKDMAREVLEKKLFIENIILLREIEDRRDFMEEEIGVDMSIYEEKFLQIIENLFKIHFSKEQFALIQYYLYQVPNIDNWDGMIDLSDGKDMITVKFETPEQVWNVITSLKEVKK
Ga0181359_10058796F061656N/AMPQFCFYSKNNHTQEPIGVVYAASKEEAVKFFSLSKQLPINDFLTIFEVKNYTYGTQEGLKENTKQLLKG
Ga0181359_10058797F032541N/AMSLINEIKEMLSEVTKVNFKGNKFVLKIDVNEDPNKKGIKVQFLPTTFAGMSKQQQDNIAMDLGAKLNQGLSALGLAVERDRELKDKTIVGFFIYIEYLDKIIINALNQAANEPSNN
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