NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1004929

Scaffold Ga0181359_1004929


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1004929 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4290
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F010462Metagenome / Metatranscriptome303Y
F030735Metagenome / Metatranscriptome184Y
F096923Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100492910F096923N/AMKTIGIVILWFVFVGALASLVSCSSAVHCDAYGQTKQIETKTVSK
Ga0181359_10049293F000716N/AMEKLKQEIRNYQLNAGKNYMQYEQDKYSIYQNYLYKRALYGLDSLTEKELTAMCGKKKQRILNVYKRAQNVLNIFKQKVAIKYTNDIFKSLFPNSDITKEILSYDYTDEKFKNTLTFKDLNIGKDQIISIFISEGILPKNFLSLQEAPVTLPRLKNEAKA
Ga0181359_10049295F010462GAGMLYQLPNGKVVHLSIEEFLDLTDQDIQYLMSIDFGEHIRDPFTGSAVEKNTREKYIDTDFLPLEDYDLNDMPSDDLPFDDIIDLEDPLDN
Ga0181359_10049298F030735N/AMKIVFLWYLLTGTVKYQQTMDGHKQYALFFKDGKVVDYAYEAEILEYIKTGTFEYDETLELKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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