NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1002137

Scaffold Ga0181359_1002137


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1002137 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5642
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003579Metagenome / Metatranscriptome478Y
F005113Metagenome / Metatranscriptome411Y
F013396Metagenome271N
F046325Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100213710F013396N/AVTPRRLLLLAVLALGLVVVLGLALRSERVLTAGLPLRIIVASEAEAWTLAGPSAVVVLGTGSMVPYIPAAPKGADPLRTVSALAVLVSGARYADIKAGSLCIYVPVWAGRNVMHQAAQIDGGGWIMTGLGNKEYENKERVTAANFVGIVQRTYIWP
Ga0181359_10021373F046325N/AMSSDSIVTDIPKEFVRKWWWEIQNGLPNEKAKVHEHQARLAAEMRKQGSTQMEGLGQVAARINPRLFFRLQGQHGNNVHEWMPEYLKDNPHLCAVGYRPKVNAARHGLTGGWLKNKD
Ga0181359_10021378F003579N/AMTIPIAPYTMGSPAQPKVGTLFEVRYVQYTDPTAVADCHLLDAQGVEIMPVGLVPATAEQCAEWTDDAAFAAVLAVNAGFELVSEE
Ga0181359_10021379F005113GAGGMTKDEHKNAIVSQLQQQSLNLLVDSLAAALAEIETLKAAAADKPTP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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