NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1001062

Scaffold Ga0181359_1001062


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1001062 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6987
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007467Metagenome / Metatranscriptome350Y
F025460Metagenome201N
F030376Metagenome / Metatranscriptome185N
F052470Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10010621F052470AGGAGMALTLSESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWTPKVRLTFELPDQTDEFEVEENGKRTTVQKPM
Ga0181359_10010623F007467N/AVNEKEAWAKFEEGLKDAESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISKANKTWRN
Ga0181359_10010625F030376GAGMKAIITMTLTAMLMASVMAEDDDADAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYYKSGSSVVGKDATFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDN
Ga0181359_10010628F025460AGGAGMAVLDVPELMNMFRQDELQKQAVAEAQRKQALEERAMALKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGSNISNEQSLQNEEVEAQRAELTDRLQKLQKDKVKQEIEMAKGDKRTFAMEAGLGLIGAKPRADVLKDIETEAGVYRNKLAELGFNRQAGQMETNVPDYQSEAMPLQATPQTAPQVAPGTPAQAQAQPEAPKNFKSLQEAKAAGVKPGQLIYINGKPGRLQARQ
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