| Basic Information | |
|---|---|
| Taxon OID | 3300019784 Open in IMG/M |
| Scaffold ID | Ga0181359_1000205 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12438 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (18.75%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides goldsteinii | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031407 | Metagenome / Metatranscriptome | 182 | N |
| F034112 | Metagenome / Metatranscriptome | 175 | N |
| F060725 | Metagenome | 132 | N |
| F064518 | Metagenome | 128 | N |
| F090088 | Metagenome / Metatranscriptome | 108 | N |
| F100712 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181359_100020512 | F100712 | N/A | MDTSLQKLADDISLLAITVVANEWRAQGHELSGSAVKQMETLVRMEINTLVIEGLVPDYMAINNSGVTADRIPYYPNSGRKTSKYIDGLIDYVQRRMGKSEKEAKGIAFAIASKHKKEGMPTKNSVIKHSKTGRRTGFIEIALEKNSAKFIELIENAITFSVEATIESYYKSILNR |
| Ga0181359_100020514 | F060725 | N/A | MIKLFIGGQEVDLNQDEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFVAANFKVSLIGNNADWFADVGNTLVRDLGWDDIEINTANVKTNYDPLTSEHCYILMKWKAWENETFIVNNEMTPAIFVWQVLEKAFLNRGYQLNSIFKTDPFNRLIIPMGLELGADYLNDFVNLRASSPSPSLLSNSNSSPILITFTDETTSPNFDTGGNYVSGVYTVPITATYTLKAELNIATTIIIPTPTDEVLVGWEINGVFEEGEDLGQEPSFNDSVIIEFITDLVEGDLVRFVVKHNNCGFLMGLNGSIEIIGSKAIFETGRTFDLQYVIPISWYVRDVIADLTTIFNLAWETNVLSKQVYAYPKDNYTLRYRADATGAISLTTFEGFFKGSDKYDLNTRDVQGSDFQILDGYKSSQVLAYATDDDTTNKEEERRGVNIYSGGYNFPTDRFDNGVEFIYTKFFAKTIHISDVDITSGGIYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGYIRLYDDTSSASSAFDFPAAFMVNYNDPSGGDFNLSFSDEVTNYTNVMQGIFKTFHLQTYKRIELGKVYTTFAKFKPKDITQLSFRRKGIIGSSNFIIQNIEYNPKSNSPAKTVLLYDEKPNVNDLSKVLNTITLAGSTPQSGTVTGSGSGLVGANGASVNIQLSYTPFINSMTNVLVLPVNSGITQVSNTNANVLVFMNGQKLIPTVQYIIGGSTIGINVNTHYDGANYEVVVNGVTKG |
| Ga0181359_100020515 | F090088 | AGG | MLDKEALAKKVFLEFYSTFILDDEIEETGRVFYLAQKASMIHLKLIRGILQNDEYIINMAYIKDVINKIKI |
| Ga0181359_10002056 | F031407 | N/A | MTDKEKALIIIDLIEKITQEIIYKPMQRKRLLQMRGHLEKAVKLTGNGIKREWSRPPSLPIVSHAKAEPIPFIPTTTETNGDLLADNIPVVTKKARKR |
| Ga0181359_10002057 | F034112 | N/A | MVIFNIGNKQIKYNYPETAADITLEQYIYFAKFLLPQHPKVEIEAMQYLNDRDAVYQKILPYAKKLKVEVKKIEQIFVIGEIGDILENKEVKDNVRRFLPPLISQWVTNDEQLNQRLEIMDTVWEANVRYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVYIYTKIMNAINTPAETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPAGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSEKYTLDLQTSMLQRAMENLN |
| Ga0181359_10002058 | F064518 | N/A | VAESGLFNLTGFTPMESAEKAKLYQVFQYLASKAAEEKVIEDLSKQKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |