NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190264_11694373

Scaffold Ga0190264_11694373


Overview

Basic Information
Taxon OID3300019377 Open in IMG/M
Scaffold IDGa0190264_11694373 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)562
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.0262Long. (o)-109.5407Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006511Metagenome / Metatranscriptome371Y
F062485Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0190264_116943731F062485N/ATITFGLYPIAICTSCSARWIQDGRQQRAINQVQEPSLMGQGPSLMAQGRSQPATQPALPRALTGQLLPGGSPW
Ga0190264_116943732F006511GGAGGMVIHYPPARLRHNSDQPTAITNVLVATSGSSSTGEIPLGTPTCSARTRRGRWALYPNGDQVVVVWPGGALAGSPVEVAGALDRLGDGQDDLDRAAVWAIRQVLTDPATTDAARWS

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